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Rice genomics research 20 years album, some of the current research progress and hotspots and some directions that need to be paid attention to in the future

author:Frontiers of Plant Science
Rice genomics research 20 years album, some of the current research progress and hotspots and some directions that need to be paid attention to in the future

Part 1

Volume 15, Issue 4, 2022

Rice genomics research 20 years album, some of the current research progress and hotspots and some directions that need to be paid attention to in the future

On April 5, 2002, Science published back-to-back sketches of the genome sequences of two subspecies of rice, indica/Xian and japonica/Geng, led by Chinese and American scientists, which were the genome sequences of the first important crop officially published. In order to celebrate the 20th anniversary of the publication of rice genome sequence sketches, MP published the album "Celebrating 20 Years of Rice Genomics Research", which published a total of 20 articles, including 5 Opinions, 5 Spotlight, 1 Review, 2 Source Articles and 7 Research Articles, summarizing the achievements of rice genomics research in the past 20 years and showing some progress and hotspots of current research. Looking ahead to some of the directions that future research needs to focus on.

https://www.cell.com/molecular-plant/current#closeFullCover

Opinion

Wild rice research: Advancing plant science and food security

Robert J. Henry

https://doi.org/10.1016/j.molp.2021.12.006

Weedyrice, a hidden gold mine in the paddy field

Dongya Wu, Jie Qiu, Jian Sun, Beng-Kah Song, Kenneth M. Olsen, and Longjiang Fan

https://doi.org/10.1016/j.molp.2022.01.008

The Rice Codebook: from Reading to Editing

Kejian Wang, Huanbin Zhou, and Qian Qian

https://doi.org/10.1016/j.molp.2022.01.017

Beyond the Green Revolution: improving crop productivity and sustainability by modulating plant growth-metabolic coordination

Qian Liu, Kun Wu, Yunzhe Wu, Wenzhen Song, Shuoxun Wang,and Xiangdong Fu

https://doi.org/10.1016/j.molp.2022.02.011

Integration of genomic selection with doubled-haploid evaluation in hybrid breeding: from GS 1.0 to GS 4.0 and beyond

Junjie Fu, Yangfan Hao, Huihui Li, Jochen C. Reif,Shaojiang Chen, Changling Huang, Guoying Wang, Xinhai Li,Yunbi Xu, and Liang L

https://doi.org/10.1016/j.molp.2022.02.005

Spotlights

Prediction of and for new environments: what s your model?

Hans-Peter Piepho

https://doi.org/10.1016/j.molp.2022.01.018

Redoxand acetylation coordinate ABA-independent osmotic stress response

Christophe Belin and Jean-Philippe Reichheld

https://doi.org/10.1016/j.molp.2022.01.019

Improving rice photosynthesis and yield through trehalose 6-phosphate signalling

Matthew J. Paul, Javier A. Miret, and Cara A. Griffifiths

https://doi.org/10.1016/j.molp.2022.03.004

Thesupercomplex formation between the chloroplast NADH dehydrogenase-like complex and photosystem I

Toshiharu Shikanai

https://doi.org/10.1016/j.molp.2022.03.007

Inferring the genome-wide history of grasses

Matheus E. Bianconi, Pascal-Antoine Christin,and Luke T. Dunning

https://doi.org/10.1016/j.molp.2022.03.008

Review Article

20 Years of Rice Genomics Research: from Sequencing, Functional Genomics to Quantitative Genomics

Changsheng Wang and Bin Han

https://doi.org/10.1016/j.molp.2022.03.009

STI PCR: An efficient method for amplification and de novo synthesis of long DNA sequences

Zhe Zhao, Xianrong Xie, Weizhi Liu, Jingjing Huang, Jiantao Tan,Haixin Yu, Wubei Zong, Jintao Tang, Yanchang Zhao, Yang Xue,Zhizhan Chu, Letian Chen, and Yao-Guang Liu

https://doi.org/10.1016/j.molp.2021.12.018

Acompressed variance component mixed model for detecting QTNs, and QTN-by-environment and QTN-by-QTN interactions in genome-wide association studies

Mei Li, Ya-Wen Zhang, Ze-Chang Zhang, Yu Xiang, Ming-Hui Liu,Ya-Hui Zhou, Jian-Fang Zuo, Han-Qing Zhang, Ying Chen,and Yuan-Ming Zhang

https://doi.org/10.1016/j.molp.2022.02.012

Research Article

RiceGLUTATHIONE PEROXIDASE1-mediated oxidation of bZIP68 positively regulates ABA-independent osmotic stress signaling

Heng Zhou, Feng Zhang, Fengchao Zhai, Ye Su, Ying Zhou,Zhenglin Ge, Priyadarshini Tilak, Jurgen Eirich, Iris Finkemeier,Ling Fu, Zongmin Li, Jing Yang, Wenbiao Shen, Xingxing Yuan,and Yanjie Xie

https://doi.org/10.1016/j.molp.2021.11.006

The research group of Xie Yanjie of Nanjing Agricultural University Science Institute revealed the mechanism of rice glutathione peroxidase as a redox sensor to sense and transmit osmotic stress signal transduction.

miR395-regulated sulfate metabolism exploits pathogen sensitivity to sulfate to boost immunity in rice

Zeyu Yang, Shugang Hui, Yan Lv, Miaojing Zhang, Dan Chen,Jingjing Tian, Haitao Zhang, Hongbo Liu, Jianbo Cao, Wenya Xie,Changyin Wu, Shiping Wang, and Meng Yuan

https://doi.org/10.1016/j.molp.2021.12.013

The rice team at Huazhong Agricultural University revealed the mechanism by which rice miR395 enhances rice resistance to bacterial disease by regulating sulfate ion transport and assimilation processes.

A viral protein orchestrates rice ethylene signaling to coordinate viral infection and insect vector-mediated transmission

Yaling Zhao, Xue Cao, Weihua Zhong, Shunkang Zhou,Zhanbiao Li, Hong An, Xiahua Liu, Ruifeng Wu, Surakshya Bohora,Yan Wu, Zhenyi Liang, Jiahao Chen, Xin Yang, Guohui Zhou,and Tong Zhang

https://doi.org/10.1016/j.molp.2022.01.006

The team of Professor Zhou Guohui and Associate Professor Zhang Tong of South China Agricultural University revealed the molecular mechanism of the southern rice black-striped dwarf virus that coordinates viral infestation and insect mediator propagation by regulating the ethylene signal of the host rice.

The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice

Zhiyong Li, Xiangjin Wei, Xiaohong Tong, Juan Zhao, Xixi Liu,Huimei Wang, Liqun Tang, Yazhou Shu, Guanghao Li,Yifeng Wang, Jiezheng Ying, Guiai Jiao, Honghong Hu,Peisong Hu, and Jian Zhang

https://doi.org/10.1016/j.molp.2022.01.016

Zhang Jian and Academician Hu Peisong of the State Key Laboratory of Rice Biology of China Rice Research Institute revealed the mechanism by which trehalose phosphate regulates the occurrence of carbon source distribution in rice.

Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice

Jiehua Qiu, Junhui Xie, Ya Chen, Zhenan Shen, Huanbin Shi,Naweed I. Naqvi, Qian Qian, Yan Liang, and Yanjun Kou

https://doi.org/10.1016/j.molp.2022.02.014

The Rice-Pathogen Interaction Team of the State Key Laboratory of Rice Biology of China Rice Research Institute revealed the mechanism of temperature-regulated rice blast.

OsHYPK-mediated protein N-terminal acetylation coordinates plant development and abiotic stress responses in rice

Xiaodi Gong, Yaqian Huang, Yan Liang, Yundong Yuan, Yuhao Liu,Tongwen Han, Shujia Li, Hengbin Gao, Bo Lv, Xiahe Huang,Eric Linster, Yingchun Wang, Markus Wirtz, and Yonghong Wang

Professor Wang Yonghong's team of Shandong Agricultural University, in collaboration with Professor Wang Yingchun of the Institute of Genetics and Developmental Biology of the Chinese Academy of Sciences, and Dr. Markus Wirtz of the University of Heidelberg, Germany, revealed a new mechanism for OsHYPK-mediated N-terminal acetylation in rice to coordinate rice growth and development and response to abiotic stress.

https://doi.org/10.1016/j.molp.2022.03.001

A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis

Weichen Huang, Lin Zhang, J. Travis Columbus, Yi Hu,Yiyong Zhao, Lin Tang, Zhenhua Guo, Wenli Chen,Michael McKain, Madelaine Bartlett, Chien-Hsun Huang,De-Zhu Li, Song Ge, and Hong Ma

https://doi.org/10.1016/j.molp.2022.01.015

Professor Ma Hong of Pennsylvania State University and Fudan University reported his latest research results in the field of molecular systematics of the grass family. Within the framework of nuclear gene system relationships, molecular clocks and fossil calibrations are used to speculate that the grasses originated in the early Cretaceous period about 100 million years ago. The most recent common ancestor of the BOP and PACMAD clades originated around the late Cretaceous period (~81 million years ago).

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